Computational Drug Discovery for Small-Molecule Teams

Better molecule decisions before synthesis.

One integrated computational pipeline for small-molecule drug discovery — from target and pocket preparation through virtual screening, higher-fidelity rescoring, and scalable FEP.

We apply the right level of physics at the right stage: fast screening where scale matters, higher-fidelity scoring where confidence matters, and FEP where medicinal chemistry decisions need deeper evidence.

Docking
Rescoring
FEP
Covalent
02 / Workflow

From target to lead decisions.

  1. Stage 01

    Prepare the target and build credible binding hypotheses.

    Target and pocket preparation, binding-mode hypotheses, and screening-ready structures that create a stronger foundation for downstream decisions.

  2. Stage 02

    Screen libraries and prioritize hits at scale.

    High-throughput docking and virtual screening to identify promising candidates faster, while improving pose quality and early ranking.

  3. Stage 03

    Re-rank the shortlist with higher-fidelity physics.

    Rescore selected compounds to reduce false positives, improve hit triage, and focus synthesis and assay budgets on the molecules most worth advancing.

  4. Stage 04

    Optimize lead series with scalable FEP.

    For congeneric series and medicinal chemistry cycles, we plan, run, and analyze FEP campaigns that help teams compare analogs with more confidence.

  5. Stage 05

    Extend into covalent inhibitors and AI-ready data.

    Covalent modeling and physics-grade datasets generated from the same computational backbone, ready for model training.

03 / Flagship

A practical FEP workspace for modern drug design teams.

BFEP brings mapping, analysis, and simulation into one environment for lead optimization. Visualize perturbation networks, inspect ligand relationships and confidence, and run high-fidelity free energy calculations at GPU scale.

Network planning
Mapping QA
Pose inspection
AI review notes
GPU-scale runs
Reproducible reports
Explore BFEP →
BFEP running on a lab workstation
Perturbation network
Mapping QA
AI review assistant
BFEP / Network: bench-116 nodes · 16 ligands · 24 edges
04 / Proof
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Granted patents
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US patent applications
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PhDs & PhD candidates
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Citations
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Publications
05 / Why BEIT

A system designed to improve decision quality across the early discovery funnel.

A.

One integrated workflow.

Target prep, docking, rescoring and FEP coordinated as a single pipeline — not a portfolio of disconnected tools.

B.

Scientist-led delivery.

PhD computational chemists embedded in your program. Methods chosen for the decision at hand, not the default setting.

C.

Value on today's hardware.

Production-grade results on classical and GPU infrastructure, with a clear path to hybrid and quantum methods as they mature.

06 / In Practice

Trusted on focused small-molecule discovery programs.

CASE / MOLECURE

Candidate prioritization across two target programs — system preparation, virtual screening, rescoring, and FEP — delivered with clear reporting and reproducible methodology.

Stages touched
PREP
SCREEN
RESCORE
OPT
EXTEND
2
Target programs
Full
Workflow coverage
GPU
FEP at scale
Reproducible runs
Read full case study →
CASE / METASTHERA

Computational hit triage for a focused discovery program — compound preparation, property assessment, virtual screening, docking, rescoring, and FEP support — delivered with structured reporting and reproducible methodology.

Stages touched
PREP
SCREEN
RESCORE
OPT
EXTEND
Full
In silico workflow
Large
Library-scale triage
GPU
FEP-ready execution
Reproducible reporting
Read full case study →
07 / Next

Bring us your target, your hit list, or your lead series.

We use advanced computational methods to help reduce uncertainty and support faster decision-making in your drug development program. We can improve, depict, or establish the target's structure. We can re-evaluate your initial set of results (hits) and indicate the best-fitting substance.

08 / Partners

Our partners

NVIDIA Inception Program member

We are proud member of

Inception Program for Startups

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